Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Gm46209-201ENSMUST00000217912 553 ntBASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Gm44344-201ENSMUST00000200287 129 ntBASIC17.06■□□□□ 0.32
Brf1Q8CFK2 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Brf1Q8CFK2 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Gm37912-201ENSMUST00000191895 3076 ntBASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Gm15653-201ENSMUST00000119247 907 ntBASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Ighv1-25-201ENSMUST00000195638 345 ntBASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 AC139350.3-201ENSMUST00000226151 420 ntBASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Brf1Q8CFK2 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Gm26513-201ENSMUST00000181802 2489 ntBASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms