Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nup88Q8CEC0 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nup88Q8CEC0 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Nup88Q8CEC0 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Tcf21-202ENSMUST00000218002 1788 ntBASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Gm29541-201ENSMUST00000191351 678 ntBASIC16.7■□□□□ 0.26
Nup88Q8CEC0 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nup88Q8CEC0 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Gm8116-201ENSMUST00000182917 1201 ntBASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Gm8597-201ENSMUST00000191525 1109 ntBASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 AC131743.5-201ENSMUST00000220775 1618 ntBASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.69■□□□□ 0.26
Nup88Q8CEC0 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Gm13015-201ENSMUST00000118674 204 ntBASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Gm27920-201ENSMUST00000183953 96 ntBASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Gm5186-201ENSMUST00000218781 920 ntBASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Nup88Q8CEC0 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Nup88Q8CEC0 Gm45630-201ENSMUST00000210243 1911 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms