Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Gm27494-201ENSMUST00000184735 189 ntBASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ccdc38Q8CDN8 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ccdc38Q8CDN8 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ccdc38Q8CDN8 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Ccdc38Q8CDN8 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
Ccdc38Q8CDN8 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ccdc38Q8CDN8 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ccdc38Q8CDN8 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm15957-201ENSMUST00000118893 974 ntBASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm18889-201ENSMUST00000174284 929 ntBASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm44608-201ENSMUST00000206827 855 ntBASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ccdc38Q8CDN8 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC15.69■□□□□ 0.1
Ccdc38Q8CDN8 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms