Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 AC166997.1-201ENSMUST00000225122 572 ntBASIC19.85■□□□□ 0.77
Usp47Q8BY87 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Ap5m1-205ENSMUST00000227431 3757 ntBASIC19.85■□□□□ 0.77
Usp47Q8BY87 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC19.85■□□□□ 0.77
Usp47Q8BY87 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp47Q8BY87 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC19.84■□□□□ 0.77
Usp47Q8BY87 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC19.84■□□□□ 0.77
Usp47Q8BY87 AC162801.1-201ENSMUST00000220612 198 ntBASIC19.84■□□□□ 0.77
Usp47Q8BY87 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 AC161252.3-201ENSMUST00000225465 1549 ntBASIC19.84■□□□□ 0.77
Usp47Q8BY87 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Gm13859-201ENSMUST00000119936 1423 ntBASIC19.84■□□□□ 0.77
Usp47Q8BY87 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp47Q8BY87 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Gm45059-201ENSMUST00000205558 1077 ntBASIC19.83■□□□□ 0.77
Usp47Q8BY87 Gm19078-201ENSMUST00000206311 727 ntBASIC19.83■□□□□ 0.77
Usp47Q8BY87 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Gm26513-201ENSMUST00000181802 2489 ntBASIC19.83■□□□□ 0.77
Usp47Q8BY87 Gm37015-201ENSMUST00000192763 1521 ntBASIC19.83■□□□□ 0.77
Usp47Q8BY87 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp47Q8BY87 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Gm12091-201ENSMUST00000146791 830 ntBASIC19.83■□□□□ 0.76
Usp47Q8BY87 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Gm26464-201ENSMUST00000157094 305 ntBASIC19.83■□□□□ 0.76
Usp47Q8BY87 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Gm9908-201ENSMUST00000211534 448 ntBASIC19.83■□□□□ 0.76
Usp47Q8BY87 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 AC155286.1-201ENSMUST00000218632 448 ntBASIC19.83■□□□□ 0.76
Usp47Q8BY87 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Usp47Q8BY87 AC159006.1-201ENSMUST00000226396 258 ntBASIC19.83■□□□□ 0.76
Usp47Q8BY87 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp47Q8BY87 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp47Q8BY87 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms