Protein–RNA interactions for Protein: Q3TP92

Ctdnep1, CTD nuclear envelope phosphatase 1, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ctdnep1Q3TP92 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ctdnep1Q3TP92 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ctdnep1Q3TP92 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Ctdnep1Q3TP92 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ctdnep1Q3TP92 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ctdnep1Q3TP92 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Gm26308-201ENSMUST00000157768 69 ntBASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 AA543401-201ENSMUST00000164248 1269 ntBASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Gm25948-201ENSMUST00000175334 112 ntBASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Gm27533-201ENSMUST00000183800 152 ntBASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 AC131690.1-201ENSMUST00000218406 374 ntBASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Shd-206ENSMUST00000225145 998 ntBASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ctdnep1Q3TP92 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Mir1897-201ENSMUST00000122581 272 ntBASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 CT030704.2-201ENSMUST00000228887 494 ntBASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ctdnep1Q3TP92 Il17rd-203ENSMUST00000225146 3366 ntBASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Gm27622-201ENSMUST00000183779 60 ntBASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ctdnep1Q3TP92 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Gm42872-201ENSMUST00000200026 1967 ntBASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Gm14701-201ENSMUST00000117156 348 ntBASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Gm27618-201ENSMUST00000183671 60 ntBASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC16.29■□□□□ 0.2
Ctdnep1Q3TP92 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms