Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox9Q04887 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Sox9Q04887 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox9Q04887 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox9Q04887 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox9Q04887 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox9Q04887 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Sox9Q04887 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC14.53□□□□□ -0.08
Sox9Q04887 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Gm10339-203ENSMUST00000225409 1671 ntBASIC14.53□□□□□ -0.08
Sox9Q04887 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Sox9Q04887 Gm12882-201ENSMUST00000121696 517 ntBASIC14.53□□□□□ -0.08
Sox9Q04887 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.53□□□□□ -0.08
Sox9Q04887 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.53□□□□□ -0.08
Sox9Q04887 Gm17823-201ENSMUST00000217830 1006 ntBASIC14.53□□□□□ -0.08
Sox9Q04887 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Sox9Q04887 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Sox9Q04887 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
Sox9Q04887 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Sox9Q04887 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Sox9Q04887 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Ankra2-208ENSMUST00000226100 1476 ntBASIC14.52□□□□□ -0.08
Sox9Q04887 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.52□□□□□ -0.08
Sox9Q04887 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.52□□□□□ -0.08
Sox9Q04887 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Sox9Q04887 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Sox9Q04887 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
Sox9Q04887 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC14.52□□□□□ -0.09
Sox9Q04887 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Sox9Q04887 Gm27331-201ENSMUST00000183705 60 ntBASIC14.52□□□□□ -0.09
Sox9Q04887 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.52□□□□□ -0.09
Sox9Q04887 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Gm18935-201ENSMUST00000212692 664 ntBASIC14.52□□□□□ -0.09
Sox9Q04887 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Gm9368-201ENSMUST00000219348 831 ntBASIC14.52□□□□□ -0.09
Sox9Q04887 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Sox9Q04887 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Sox9Q04887 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC14.52□□□□□ -0.09
Sox9Q04887 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.52□□□□□ -0.09
Sox9Q04887 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Sox9Q04887 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Sox9Q04887 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Sox9Q04887 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC14.51□□□□□ -0.09
Sox9Q04887 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC14.51□□□□□ -0.09
Sox9Q04887 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC14.51□□□□□ -0.09
Sox9Q04887 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC14.51□□□□□ -0.09
Sox9Q04887 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC14.51□□□□□ -0.09
Sox9Q04887 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC14.51□□□□□ -0.09
Sox9Q04887 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.51□□□□□ -0.09
Sox9Q04887 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.51□□□□□ -0.09
Sox9Q04887 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC14.51□□□□□ -0.09
Sox9Q04887 Cts7-204ENSMUST00000225321 1257 ntBASIC14.51□□□□□ -0.09
Sox9Q04887 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Sox9Q04887 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms