Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 2610203C22Rik-201ENSMUST00000115480 1246 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC11.05□□□□□ -0.64
Hoxd3P09027 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC11.05□□□□□ -0.64
Hoxd3P09027 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Gm3436-201ENSMUST00000179930 840 ntBASIC11.05□□□□□ -0.64
Hoxd3P09027 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC11.05□□□□□ -0.64
Hoxd3P09027 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Efs-202ENSMUST00000227037 2540 ntBASIC11.05□□□□□ -0.64
Hoxd3P09027 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Camk2g-217ENSMUST00000226630 1937 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm15487-201ENSMUST00000122373 465 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC11.04□□□□□ -0.64
Hoxd3P09027 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm5866-201ENSMUST00000177881 973 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm27838-201ENSMUST00000184829 128 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 AC121804.3-201ENSMUST00000223420 295 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Il2-201ENSMUST00000029275 1144 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 4933400A11Rik-201ENSMUST00000068874 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 4933400A11Rik-202ENSMUST00000068894 1217 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm10702-201ENSMUST00000098929 1268 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm5763-201ENSMUST00000155951 1530 ntBASIC11.04□□□□□ -0.64
Hoxd3P09027 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Hoxd3P09027 Gm13127-201ENSMUST00000118978 1389 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm18719-201ENSMUST00000196696 1413 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm14719-201ENSMUST00000121891 340 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms