Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Gm37014-201ENSMUST00000194723 2253 ntBASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Ccdc9Q8VC31 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Gm14752-201ENSMUST00000120719 2075 ntBASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Gm10052-201ENSMUST00000168019 960 ntBASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Gm44430-201ENSMUST00000203376 995 ntBASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Gm7729-201ENSMUST00000050143 801 ntBASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ccdc9Q8VC31 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Gm11950-201ENSMUST00000121615 838 ntBASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Gm45328-201ENSMUST00000210942 917 ntBASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ccdc9Q8VC31 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ccdc9Q8VC31 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 AC116503.1-201ENSMUST00000215445 2192 ntBASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Nudt18-202ENSMUST00000228554 3619 ntBASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ccdc9Q8VC31 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ccdc9Q8VC31 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Ccdc9Q8VC31 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms