Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC14.39□□□□□ -0.11
Sox1P53783 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC14.39□□□□□ -0.11
Sox1P53783 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.39□□□□□ -0.11
Sox1P53783 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC14.39□□□□□ -0.11
Sox1P53783 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Gm18473-201ENSMUST00000220543 868 ntBASIC14.39□□□□□ -0.11
Sox1P53783 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Sox1P53783 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Sox1P53783 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Sox1P53783 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Sox1P53783 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Mir686-201ENSMUST00000102174 109 ntBASIC14.38□□□□□ -0.11
Sox1P53783 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Gm25261-201ENSMUST00000157416 134 ntBASIC14.38□□□□□ -0.11
Sox1P53783 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
Sox1P53783 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.38□□□□□ -0.11
Sox1P53783 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC14.38□□□□□ -0.11
Sox1P53783 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.38□□□□□ -0.11
Sox1P53783 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC14.38□□□□□ -0.11
Sox1P53783 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Sox1P53783 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.38□□□□□ -0.11
Sox1P53783 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC14.37□□□□□ -0.11
Sox1P53783 Gm15371-201ENSMUST00000117057 784 ntBASIC14.37□□□□□ -0.11
Sox1P53783 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Sox1P53783 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 Gm44608-201ENSMUST00000206827 855 ntBASIC14.37□□□□□ -0.11
Sox1P53783 Gm8959-201ENSMUST00000213150 571 ntBASIC14.37□□□□□ -0.11
Sox1P53783 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.37□□□□□ -0.11
Sox1P53783 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Sox1P53783 Gm10268-201ENSMUST00000085340 555 ntBASIC14.37□□□□□ -0.11
Sox1P53783 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Sox1P53783 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Sox1P53783 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.37□□□□□ -0.11
Sox1P53783 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.37□□□□□ -0.11
Sox1P53783 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC14.37□□□□□ -0.11
Sox1P53783 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Sox1P53783 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Sox1P53783 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC14.36□□□□□ -0.11
Sox1P53783 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC14.36□□□□□ -0.11
Sox1P53783 Gm45186-201ENSMUST00000206874 478 ntBASIC14.36□□□□□ -0.11
Sox1P53783 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Sox1P53783 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC14.36□□□□□ -0.11
Sox1P53783 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sox1P53783 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.36□□□□□ -0.11
Sox1P53783 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sox1P53783 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms