Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Rfx1P48377 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Gm45098-201ENSMUST00000207179 657 ntBASIC16.93■□□□□ 0.3
Rfx1P48377 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.93■□□□□ 0.3
Rfx1P48377 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC16.93■□□□□ 0.3
Rfx1P48377 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
Rfx1P48377 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Gm44065-201ENSMUST00000203184 3527 ntBASIC16.92■□□□□ 0.3
Rfx1P48377 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.92■□□□□ 0.3
Rfx1P48377 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.92■□□□□ 0.3
Rfx1P48377 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.92■□□□□ 0.3
Rfx1P48377 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Rfx1P48377 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
Rfx1P48377 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Rfx1P48377 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rfx1P48377 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Rfx1P48377 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC16.91■□□□□ 0.3
Rfx1P48377 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Rfx1P48377 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.91■□□□□ 0.3
Rfx1P48377 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.91■□□□□ 0.3
Rfx1P48377 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 AC154532.1-201ENSMUST00000227860 965 ntBASIC16.91■□□□□ 0.3
Rfx1P48377 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Rfx1P48377 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Rfx1P48377 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Pcgf5-211ENSMUST00000225920 6443 ntBASIC16.91■□□□□ 0.3
Rfx1P48377 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rfx1P48377 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms