Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lima1Q9ERG0 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lima1Q9ERG0 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Gm13464-201ENSMUST00000119418 935 ntBASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Tcf21-202ENSMUST00000218002 1788 ntBASIC14.01□□□□□ -0.17
Lima1Q9ERG0 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lima1Q9ERG0 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14□□□□□ -0.17
Lima1Q9ERG0 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC14□□□□□ -0.17
Lima1Q9ERG0 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC14□□□□□ -0.17
Lima1Q9ERG0 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC14□□□□□ -0.17
Lima1Q9ERG0 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC14□□□□□ -0.17
Lima1Q9ERG0 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Lima1Q9ERG0 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms