Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Gm5620-201ENSMUST00000077991 1348 ntBASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Gm15371-201ENSMUST00000117057 784 ntBASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Trav4d-2-201ENSMUST00000120914 335 ntBASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Zscan30-202ENSMUST00000224144 1458 ntBASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chd4Q6PDQ2 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm29705-201ENSMUST00000212598 474 ntBASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm24447-201ENSMUST00000083977 338 ntBASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm8706-201ENSMUST00000197372 1491 ntBASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm13123-201ENSMUST00000122173 492 ntBASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Gm17330-201ENSMUST00000221047 165 ntBASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC18.19■□□□□ 0.5
Chd4Q6PDQ2 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Gm13730-201ENSMUST00000121036 1462 ntBASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Abhd6-203ENSMUST00000225234 1958 ntBASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chd4Q6PDQ2 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Gm37297-201ENSMUST00000192974 2384 ntBASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Gm44064-201ENSMUST00000204964 1087 ntBASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chd4Q6PDQ2 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms