Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Mmp14-206ENSMUST00000225641 3238 ntBASIC15.63■□□□□ 0.09
Hmgb1P63158 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb1P63158 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb1P63158 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb1P63158 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb1P63158 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb1P63158 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Hmgb1P63158 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Hmgb1P63158 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
Hmgb1P63158 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC15.62■□□□□ 0.09
Hmgb1P63158 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Hmgb1P63158 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Gm9109-201ENSMUST00000120254 1405 ntBASIC15.62■□□□□ 0.09
Hmgb1P63158 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.62■□□□□ 0.09
Hmgb1P63158 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC15.62■□□□□ 0.09
Hmgb1P63158 Gm18206-201ENSMUST00000207027 926 ntBASIC15.62■□□□□ 0.09
Hmgb1P63158 Gm18057-201ENSMUST00000208220 503 ntBASIC15.62■□□□□ 0.09
Hmgb1P63158 Gm45612-201ENSMUST00000211320 160 ntBASIC15.62■□□□□ 0.09
Hmgb1P63158 Bloc1s5-203ENSMUST00000224902 612 ntBASIC15.62■□□□□ 0.09
Hmgb1P63158 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Hmgb1P63158 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gm2810-201ENSMUST00000118681 990 ntBASIC15.61■□□□□ 0.09
Hmgb1P63158 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.61■□□□□ 0.09
Hmgb1P63158 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Hmgb1P63158 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC15.61■□□□□ 0.09
Hmgb1P63158 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Hmgb1P63158 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC15.6■□□□□ 0.09
Hmgb1P63158 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.6■□□□□ 0.09
Hmgb1P63158 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Hmgb1P63158 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Hmgb1P63158 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.6■□□□□ 0.09
Hmgb1P63158 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Hmgb1P63158 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Gm38391-201ENSMUST00000191720 4069 ntBASIC15.6■□□□□ 0.09
Hmgb1P63158 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Gm13857-203ENSMUST00000150561 2337 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Hmgb1P63158 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.59■□□□□ 0.09
Hmgb1P63158 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Hmgb1P63158 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
Hmgb1P63158 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms