Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Cdx1P18111 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.5□□□□□ -0.57
Cdx1P18111 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Cdx1P18111 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC11.5□□□□□ -0.57
Cdx1P18111 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx1P18111 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Cdx1P18111 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC11.49□□□□□ -0.57
Cdx1P18111 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Gm12260-201ENSMUST00000122447 411 ntBASIC11.49□□□□□ -0.57
Cdx1P18111 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC11.49□□□□□ -0.57
Cdx1P18111 Gm42670-201ENSMUST00000201816 1292 ntBASIC11.49□□□□□ -0.57
Cdx1P18111 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Gm45683-201ENSMUST00000210825 1247 ntBASIC11.49□□□□□ -0.57
Cdx1P18111 CT943659.1-201ENSMUST00000215459 326 ntBASIC11.49□□□□□ -0.57
Cdx1P18111 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
Cdx1P18111 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx1P18111 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Cdx1P18111 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Cdx1P18111 Gm13036-201ENSMUST00000117799 748 ntBASIC11.48□□□□□ -0.57
Cdx1P18111 Gm6184-201ENSMUST00000120403 1261 ntBASIC11.48□□□□□ -0.57
Cdx1P18111 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
Cdx1P18111 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC11.48□□□□□ -0.57
Cdx1P18111 Gm9727-201ENSMUST00000161387 555 ntBASIC11.48□□□□□ -0.57
Cdx1P18111 Gm27702-201ENSMUST00000184512 56 ntBASIC11.48□□□□□ -0.57
Cdx1P18111 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Cdx1P18111 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Cdx1P18111 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms