Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col1a1P11087 Gm1335-201ENSMUST00000121653 386 ntBASIC16.41■□□□□ 0.22
Col1a1P11087 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC16.41■□□□□ 0.22
Col1a1P11087 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col1a1P11087 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC16.41■□□□□ 0.22
Col1a1P11087 Gm7584-201ENSMUST00000175829 940 ntBASIC16.41■□□□□ 0.22
Col1a1P11087 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Col1a1P11087 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
Col1a1P11087 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col1a1P11087 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Col1a1P11087 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Col1a1P11087 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.4■□□□□ 0.22
Col1a1P11087 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col1a1P11087 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.4■□□□□ 0.22
Col1a1P11087 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Gm7783-201ENSMUST00000204795 781 ntBASIC16.4■□□□□ 0.22
Col1a1P11087 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col1a1P11087 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC16.4■□□□□ 0.22
Col1a1P11087 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.4■□□□□ 0.22
Col1a1P11087 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Col1a1P11087 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Col1a1P11087 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col1a1P11087 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col1a1P11087 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col1a1P11087 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Mir698-201ENSMUST00000102164 109 ntBASIC16.39■□□□□ 0.21
Col1a1P11087 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC16.39■□□□□ 0.21
Col1a1P11087 Mir3102-201ENSMUST00000175555 104 ntBASIC16.39■□□□□ 0.21
Col1a1P11087 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC16.39■□□□□ 0.21
Col1a1P11087 Gm43133-201ENSMUST00000197472 463 ntBASIC16.39■□□□□ 0.21
Col1a1P11087 AC073947.2-201ENSMUST00000215888 1130 ntBASIC16.39■□□□□ 0.21
Col1a1P11087 Gm17823-201ENSMUST00000217830 1006 ntBASIC16.39■□□□□ 0.21
Col1a1P11087 Gm45930-201ENSMUST00000221330 292 ntBASIC16.39■□□□□ 0.21
Col1a1P11087 CT030704.2-201ENSMUST00000228887 494 ntBASIC16.39■□□□□ 0.21
Col1a1P11087 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col1a1P11087 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC16.39■□□□□ 0.21
Col1a1P11087 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col1a1P11087 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col1a1P11087 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC16.38■□□□□ 0.21
Col1a1P11087 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Col1a1P11087 Gm11793-201ENSMUST00000120433 981 ntBASIC16.38■□□□□ 0.21
Col1a1P11087 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC16.38■□□□□ 0.21
Col1a1P11087 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC16.38■□□□□ 0.21
Col1a1P11087 Gm27501-201ENSMUST00000183599 107 ntBASIC16.38■□□□□ 0.21
Col1a1P11087 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC16.38■□□□□ 0.21
Col1a1P11087 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Gm18934-201ENSMUST00000216671 1044 ntBASIC16.38■□□□□ 0.21
Col1a1P11087 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Col1a1P11087 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col1a1P11087 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC16.38■□□□□ 0.21
Col1a1P11087 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms