Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Hoxd3P09027 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC11.09□□□□□ -0.63
Hoxd3P09027 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
Hoxd3P09027 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm38188-201ENSMUST00000192879 856 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm43692-201ENSMUST00000198236 1062 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm10046-201ENSMUST00000208208 632 ntTSL 2 BASIC11.09□□□□□ -0.63
Hoxd3P09027 AC125206.2-201ENSMUST00000217454 574 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm46209-201ENSMUST00000217912 553 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm42632-201ENSMUST00000201707 2411 ntBASIC11.09□□□□□ -0.63
Hoxd3P09027 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Hoxd3P09027 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hoxd3P09027 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
Hoxd3P09027 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.63
Hoxd3P09027 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
Hoxd3P09027 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Gm14667-201ENSMUST00000119448 1350 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Gm14399-202ENSMUST00000108929 813 ntTSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
Hoxd3P09027 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 AA619741-201ENSMUST00000195095 646 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 Gm45359-201ENSMUST00000210635 427 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Gm7775-201ENSMUST00000218871 853 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 AC154828.2-201ENSMUST00000220908 1070 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Wdyhv1-203ENSMUST00000226889 394 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 AC123645.1-201ENSMUST00000228469 605 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Gm13034-201ENSMUST00000121342 3177 ntBASIC11.08□□□□□ -0.64
Hoxd3P09027 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC11.08□□□□□ -0.64
Hoxd3P09027 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hoxd3P09027 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms