Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
Cpsf3Q9QXK7 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cpsf3Q9QXK7 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cpsf3Q9QXK7 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm15460-201ENSMUST00000118147 391 ntBASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm14719-201ENSMUST00000121891 340 ntBASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cpsf3Q9QXK7 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Gm27838-201ENSMUST00000184829 128 ntBASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 AC238811.1-201ENSMUST00000225302 441 ntBASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 AC132863.2-201ENSMUST00000226643 799 ntBASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cpsf3Q9QXK7 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms