Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Ushbp1Q8R370 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Ushbp1Q8R370 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
Ushbp1Q8R370 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Gm18737-201ENSMUST00000173594 937 ntBASIC15.95■□□□□ 0.14
Ushbp1Q8R370 AC123645.1-201ENSMUST00000228469 605 ntBASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.95■□□□□ 0.14
Ushbp1Q8R370 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Ushbp1Q8R370 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Mir7684-201ENSMUST00000183858 60 ntBASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Ushbp1Q8R370 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms