Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Gm27622-201ENSMUST00000183779 60 ntBASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Upf3bQ3ULL6 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Gm24543-201ENSMUST00000103867 82 ntBASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 BC001981-202ENSMUST00000191393 1545 ntBASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Upf3bQ3ULL6 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Gm37277-201ENSMUST00000194052 1111 ntBASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Upf3bQ3ULL6 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC15.21■□□□□ 0.02
Upf3bQ3ULL6 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms