Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC15.69■□□□□ 0.1
Col6a1Q04857 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC15.69■□□□□ 0.1
Col6a1Q04857 Gm6244-201ENSMUST00000178732 841 ntBASIC15.69■□□□□ 0.1
Col6a1Q04857 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC15.69■□□□□ 0.1
Col6a1Q04857 AC139580.1-202ENSMUST00000223574 928 ntBASIC15.69■□□□□ 0.1
Col6a1Q04857 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col6a1Q04857 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Col6a1Q04857 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.69■□□□□ 0.1
Col6a1Q04857 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col6a1Q04857 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col6a1Q04857 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col6a1Q04857 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Gm37424-201ENSMUST00000191727 561 ntBASIC15.68■□□□□ 0.1
Col6a1Q04857 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a1Q04857 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col6a1Q04857 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
Col6a1Q04857 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Mir1894-201ENSMUST00000122802 81 ntBASIC15.67■□□□□ 0.1
Col6a1Q04857 Gm17420-201ENSMUST00000164753 153 ntBASIC15.67■□□□□ 0.1
Col6a1Q04857 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col6a1Q04857 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col6a1Q04857 Gm27839-201ENSMUST00000184242 106 ntBASIC15.67■□□□□ 0.1
Col6a1Q04857 AC159896.2-201ENSMUST00000214753 269 ntBASIC15.67■□□□□ 0.1
Col6a1Q04857 AC154319.1-201ENSMUST00000216330 312 ntBASIC15.67■□□□□ 0.1
Col6a1Q04857 Gm17794-201ENSMUST00000220252 955 ntBASIC15.67■□□□□ 0.1
Col6a1Q04857 AL589735.1-201ENSMUST00000224353 270 ntBASIC15.67■□□□□ 0.1
Col6a1Q04857 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
Col6a1Q04857 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col6a1Q04857 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a1Q04857 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.66■□□□□ 0.1
Col6a1Q04857 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.66■□□□□ 0.1
Col6a1Q04857 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC15.66■□□□□ 0.1
Col6a1Q04857 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC15.66■□□□□ 0.1
Col6a1Q04857 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col6a1Q04857 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Col6a1Q04857 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Gm45784-201ENSMUST00000188360 142 ntBASIC15.66■□□□□ 0.1
Col6a1Q04857 AA619741-201ENSMUST00000195095 646 ntBASIC15.66■□□□□ 0.1
Col6a1Q04857 Gm7067-201ENSMUST00000207698 1249 ntBASIC15.66■□□□□ 0.1
Col6a1Q04857 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC15.66■□□□□ 0.1
Col6a1Q04857 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Gm8399-201ENSMUST00000082300 1117 ntBASIC15.66■□□□□ 0.1
Col6a1Q04857 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a1Q04857 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms