Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Gm5912-201ENSMUST00000122282 1438 ntBASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf1Q9EPU4 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Gm44719-201ENSMUST00000206404 149 ntBASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Gm25857-201ENSMUST00000082788 129 ntBASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf1Q9EPU4 Gm17150-201ENSMUST00000165577 381 ntBASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm28911-201ENSMUST00000188837 117 ntBASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm21038-201ENSMUST00000222205 1383 ntBASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf1Q9EPU4 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm9002-201ENSMUST00000178437 499 ntBASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm8463-201ENSMUST00000208573 613 ntBASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm15222-202ENSMUST00000228667 1726 ntBASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm12960-201ENSMUST00000120017 1066 ntBASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf1Q9EPU4 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf1Q9EPU4 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms