Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Sh3rf1Q69ZI1 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
Sh3rf1Q69ZI1 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sh3rf1Q69ZI1 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Sh3rf1Q69ZI1 Gm14451-201ENSMUST00000121581 1542 ntBASIC14.46□□□□□ -0.1
Sh3rf1Q69ZI1 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Sh3rf1Q69ZI1 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Sh3rf1Q69ZI1 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Gm9385-201ENSMUST00000117563 472 ntBASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Rprl2-201ENSMUST00000157150 290 ntBASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 AA543401-201ENSMUST00000164248 1269 ntBASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms