Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Ushbp1Q8R370 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC24.59■■□□□ 1.53
Ushbp1Q8R370 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC24.58■■□□□ 1.53
Ushbp1Q8R370 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ushbp1Q8R370 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ushbp1Q8R370 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC24.58■■□□□ 1.53
Ushbp1Q8R370 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Ushbp1Q8R370 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ushbp1Q8R370 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Ushbp1Q8R370 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Ushbp1Q8R370 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
Ushbp1Q8R370 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ushbp1Q8R370 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Ushbp1Q8R370 Gm5921-201ENSMUST00000075898 882 ntBASIC24.57■■□□□ 1.52
Ushbp1Q8R370 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC24.57■■□□□ 1.52
Ushbp1Q8R370 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ushbp1Q8R370 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC24.56■■□□□ 1.52
Ushbp1Q8R370 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ushbp1Q8R370 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC24.55■■□□□ 1.52
Ushbp1Q8R370 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
Ushbp1Q8R370 Gm28731-201ENSMUST00000185564 1569 ntBASIC24.54■■□□□ 1.52
Ushbp1Q8R370 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ushbp1Q8R370 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ushbp1Q8R370 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ushbp1Q8R370 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Ushbp1Q8R370 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Ushbp1Q8R370 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC24.53■■□□□ 1.52
Ushbp1Q8R370 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ushbp1Q8R370 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Ushbp1Q8R370 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC24.53■■□□□ 1.52
Ushbp1Q8R370 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC24.53■■□□□ 1.52
Ushbp1Q8R370 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ushbp1Q8R370 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ushbp1Q8R370 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ushbp1Q8R370 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Ushbp1Q8R370 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ushbp1Q8R370 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ushbp1Q8R370 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ushbp1Q8R370 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ushbp1Q8R370 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ushbp1Q8R370 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ushbp1Q8R370 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ushbp1Q8R370 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC24.49■■□□□ 1.51
Ushbp1Q8R370 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC24.49■■□□□ 1.51
Ushbp1Q8R370 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
Ushbp1Q8R370 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ushbp1Q8R370 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ushbp1Q8R370 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Ushbp1Q8R370 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ushbp1Q8R370 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ushbp1Q8R370 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ushbp1Q8R370 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Ushbp1Q8R370 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ushbp1Q8R370 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC24.47■■□□□ 1.51
Ushbp1Q8R370 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
Ushbp1Q8R370 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ushbp1Q8R370 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ushbp1Q8R370 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ushbp1Q8R370 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ushbp1Q8R370 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ushbp1Q8R370 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Ushbp1Q8R370 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
Ushbp1Q8R370 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ushbp1Q8R370 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ushbp1Q8R370 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Gm15546-201ENSMUST00000122095 826 ntBASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ushbp1Q8R370 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Gm44428-201ENSMUST00000204474 874 ntBASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ushbp1Q8R370 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
Ushbp1Q8R370 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ushbp1Q8R370 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ushbp1Q8R370 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ushbp1Q8R370 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
Ushbp1Q8R370 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ushbp1Q8R370 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
Ushbp1Q8R370 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Ushbp1Q8R370 AC153524.1-201ENSMUST00000220436 1935 ntBASIC24.4■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms