Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col6a6Q8C6K9 Serp2-204ENSMUST00000228055 705 ntBASIC20.05■□□□□ 0.8
Col6a6Q8C6K9 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC20.05■□□□□ 0.8
Col6a6Q8C6K9 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col6a6Q8C6K9 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col6a6Q8C6K9 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Col6a6Q8C6K9 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Col6a6Q8C6K9 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Col6a6Q8C6K9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col6a6Q8C6K9 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.03■□□□□ 0.8
Col6a6Q8C6K9 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.03■□□□□ 0.8
Col6a6Q8C6K9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col6a6Q8C6K9 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Col6a6Q8C6K9 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Col6a6Q8C6K9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col6a6Q8C6K9 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.02■□□□□ 0.8
Col6a6Q8C6K9 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.02■□□□□ 0.8
Col6a6Q8C6K9 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a6Q8C6K9 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.01■□□□□ 0.79
Col6a6Q8C6K9 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.01■□□□□ 0.79
Col6a6Q8C6K9 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a6Q8C6K9 Appbp2os-202ENSMUST00000206972 447 ntBASIC20■□□□□ 0.79
Col6a6Q8C6K9 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col6a6Q8C6K9 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20■□□□□ 0.79
Col6a6Q8C6K9 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.99■□□□□ 0.79
Col6a6Q8C6K9 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a6Q8C6K9 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.99■□□□□ 0.79
Col6a6Q8C6K9 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a6Q8C6K9 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a6Q8C6K9 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
Col6a6Q8C6K9 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a6Q8C6K9 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a6Q8C6K9 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a6Q8C6K9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.97■□□□□ 0.79
Col6a6Q8C6K9 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a6Q8C6K9 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a6Q8C6K9 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC19.97■□□□□ 0.79
Col6a6Q8C6K9 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a6Q8C6K9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a6Q8C6K9 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a6Q8C6K9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a6Q8C6K9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a6Q8C6K9 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a6Q8C6K9 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a6Q8C6K9 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Col6a6Q8C6K9 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC19.94■□□□□ 0.78
Col6a6Q8C6K9 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a6Q8C6K9 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.94■□□□□ 0.78
Col6a6Q8C6K9 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a6Q8C6K9 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a6Q8C6K9 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a6Q8C6K9 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.93■□□□□ 0.78
Col6a6Q8C6K9 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a6Q8C6K9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a6Q8C6K9 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a6Q8C6K9 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a6Q8C6K9 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a6Q8C6K9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a6Q8C6K9 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a6Q8C6K9 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Col6a6Q8C6K9 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.91■□□□□ 0.78
Col6a6Q8C6K9 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.91■□□□□ 0.78
Col6a6Q8C6K9 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.91■□□□□ 0.78
Col6a6Q8C6K9 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a6Q8C6K9 Gm22238-201ENSMUST00000175222 88 ntBASIC19.89■□□□□ 0.77
Col6a6Q8C6K9 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a6Q8C6K9 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a6Q8C6K9 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a6Q8C6K9 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a6Q8C6K9 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
Col6a6Q8C6K9 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.88■□□□□ 0.77
Col6a6Q8C6K9 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a6Q8C6K9 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a6Q8C6K9 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a6Q8C6K9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col6a6Q8C6K9 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a6Q8C6K9 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a6Q8C6K9 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a6Q8C6K9 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms