Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ccdc40Q8BI79 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ccdc40Q8BI79 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
Ccdc40Q8BI79 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ccdc40Q8BI79 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
Ccdc40Q8BI79 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ccdc40Q8BI79 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ccdc40Q8BI79 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ccdc40Q8BI79 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ccdc40Q8BI79 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC22.65■■□□□ 1.22
Ccdc40Q8BI79 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ccdc40Q8BI79 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Ccdc40Q8BI79 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ccdc40Q8BI79 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ccdc40Q8BI79 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ccdc40Q8BI79 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ccdc40Q8BI79 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ccdc40Q8BI79 Gm9806-201ENSMUST00000051080 552 ntBASIC22.64■■□□□ 1.21
Ccdc40Q8BI79 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ccdc40Q8BI79 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ccdc40Q8BI79 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC22.64■■□□□ 1.21
Ccdc40Q8BI79 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ccdc40Q8BI79 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ccdc40Q8BI79 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ccdc40Q8BI79 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ccdc40Q8BI79 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ccdc40Q8BI79 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 Scarna2-201ENSMUST00000157560 414 ntBASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ccdc40Q8BI79 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Gm7199-201ENSMUST00000118327 1485 ntBASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ccdc40Q8BI79 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Ccdc40Q8BI79 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Ccdc40Q8BI79 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
Ccdc40Q8BI79 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Ccdc40Q8BI79 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Ccdc40Q8BI79 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Ccdc40Q8BI79 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC22.58■■□□□ 1.21
Ccdc40Q8BI79 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ccdc40Q8BI79 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC22.58■■□□□ 1.21
Ccdc40Q8BI79 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Ccdc40Q8BI79 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ccdc40Q8BI79 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ccdc40Q8BI79 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ccdc40Q8BI79 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ccdc40Q8BI79 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Ccdc40Q8BI79 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ccdc40Q8BI79 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Ccdc40Q8BI79 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Gm11687-201ENSMUST00000118911 886 ntBASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Gm5987-201ENSMUST00000196433 1151 ntBASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Gm44428-201ENSMUST00000204474 874 ntBASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ccdc40Q8BI79 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Ccdc40Q8BI79 Gm16437-201ENSMUST00000025669 507 ntBASIC22.55■■□□□ 1.2
Ccdc40Q8BI79 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ccdc40Q8BI79 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ccdc40Q8BI79 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ccdc40Q8BI79 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ccdc40Q8BI79 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ccdc40Q8BI79 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC22.53■■□□□ 1.2
Ccdc40Q8BI79 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ccdc40Q8BI79 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Ccdc40Q8BI79 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Ccdc40Q8BI79 Gm28731-201ENSMUST00000185564 1569 ntBASIC22.52■■□□□ 1.2
Ccdc40Q8BI79 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC22.52■■□□□ 1.2
Ccdc40Q8BI79 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Ccdc40Q8BI79 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
Ccdc40Q8BI79 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ccdc40Q8BI79 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ccdc40Q8BI79 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ccdc40Q8BI79 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ccdc40Q8BI79 Gm6934-201ENSMUST00000194780 1905 ntBASIC22.5■■□□□ 1.19
Ccdc40Q8BI79 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 87.3 ms