Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Ubfd1Q78JW9 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ubfd1Q78JW9 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ubfd1Q78JW9 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ubfd1Q78JW9 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ubfd1Q78JW9 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC21.46■■□□□ 1.03
Ubfd1Q78JW9 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ubfd1Q78JW9 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC21.46■■□□□ 1.03
Ubfd1Q78JW9 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ubfd1Q78JW9 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ubfd1Q78JW9 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ubfd1Q78JW9 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ubfd1Q78JW9 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ubfd1Q78JW9 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ubfd1Q78JW9 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ubfd1Q78JW9 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.44■■□□□ 1.02
Ubfd1Q78JW9 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ubfd1Q78JW9 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.43■■□□□ 1.02
Ubfd1Q78JW9 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ubfd1Q78JW9 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ubfd1Q78JW9 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ubfd1Q78JW9 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ubfd1Q78JW9 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ubfd1Q78JW9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ubfd1Q78JW9 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ubfd1Q78JW9 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ubfd1Q78JW9 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ubfd1Q78JW9 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ubfd1Q78JW9 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC21.41■■□□□ 1.02
Ubfd1Q78JW9 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ubfd1Q78JW9 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ubfd1Q78JW9 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ubfd1Q78JW9 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ubfd1Q78JW9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ubfd1Q78JW9 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Ubfd1Q78JW9 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ubfd1Q78JW9 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ubfd1Q78JW9 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.4■■□□□ 1.02
Ubfd1Q78JW9 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Ubfd1Q78JW9 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ubfd1Q78JW9 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ubfd1Q78JW9 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ubfd1Q78JW9 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.39■■□□□ 1.02
Ubfd1Q78JW9 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ubfd1Q78JW9 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC21.39■■□□□ 1.01
Ubfd1Q78JW9 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Ubfd1Q78JW9 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC21.39■■□□□ 1.01
Ubfd1Q78JW9 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ubfd1Q78JW9 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ubfd1Q78JW9 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ubfd1Q78JW9 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Ubfd1Q78JW9 Gm28731-201ENSMUST00000185564 1569 ntBASIC21.38■■□□□ 1.01
Ubfd1Q78JW9 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Ubfd1Q78JW9 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ubfd1Q78JW9 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC21.36■■□□□ 1.01
Ubfd1Q78JW9 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ubfd1Q78JW9 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC21.36■■□□□ 1.01
Ubfd1Q78JW9 Gm15820-201ENSMUST00000201566 728 ntBASIC21.36■■□□□ 1.01
Ubfd1Q78JW9 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubfd1Q78JW9 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubfd1Q78JW9 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Ubfd1Q78JW9 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Ubfd1Q78JW9 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubfd1Q78JW9 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ubfd1Q78JW9 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ubfd1Q78JW9 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubfd1Q78JW9 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubfd1Q78JW9 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubfd1Q78JW9 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC21.34■■□□□ 1.01
Ubfd1Q78JW9 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubfd1Q78JW9 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubfd1Q78JW9 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ubfd1Q78JW9 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubfd1Q78JW9 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.33■■□□□ 1.01
Ubfd1Q78JW9 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ubfd1Q78JW9 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
Ubfd1Q78JW9 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Ubfd1Q78JW9 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Ubfd1Q78JW9 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ubfd1Q78JW9 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ubfd1Q78JW9 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ubfd1Q78JW9 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ubfd1Q78JW9 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ubfd1Q78JW9 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC21.32■■□□□ 1
Ubfd1Q78JW9 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC21.32■■□□□ 1
Ubfd1Q78JW9 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ubfd1Q78JW9 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC21.31■■□□□ 1
Ubfd1Q78JW9 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.31■■□□□ 1
Ubfd1Q78JW9 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ubfd1Q78JW9 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ubfd1Q78JW9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ubfd1Q78JW9 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ubfd1Q78JW9 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms