Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ShhQ62226 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ShhQ62226 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ShhQ62226 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.3■□□□□ 0.84
ShhQ62226 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.3■□□□□ 0.84
ShhQ62226 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.3■□□□□ 0.84
ShhQ62226 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.3■□□□□ 0.84
ShhQ62226 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ShhQ62226 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.3■□□□□ 0.84
ShhQ62226 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ShhQ62226 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ShhQ62226 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
ShhQ62226 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ShhQ62226 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ShhQ62226 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ShhQ62226 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.29■□□□□ 0.84
ShhQ62226 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
ShhQ62226 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.29■□□□□ 0.84
ShhQ62226 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ShhQ62226 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
ShhQ62226 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ShhQ62226 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.28■□□□□ 0.84
ShhQ62226 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ShhQ62226 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ShhQ62226 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ShhQ62226 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ShhQ62226 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ShhQ62226 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ShhQ62226 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ShhQ62226 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ShhQ62226 Gm13238-201ENSMUST00000117655 780 ntBASIC20.27■□□□□ 0.84
ShhQ62226 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ShhQ62226 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.27■□□□□ 0.84
ShhQ62226 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
ShhQ62226 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ShhQ62226 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ShhQ62226 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.27■□□□□ 0.83
ShhQ62226 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ShhQ62226 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ShhQ62226 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ShhQ62226 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ShhQ62226 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ShhQ62226 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
ShhQ62226 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
ShhQ62226 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ShhQ62226 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ShhQ62226 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ShhQ62226 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ShhQ62226 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
ShhQ62226 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
ShhQ62226 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ShhQ62226 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ShhQ62226 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ShhQ62226 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ShhQ62226 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
ShhQ62226 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
ShhQ62226 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.23■□□□□ 0.83
ShhQ62226 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.23■□□□□ 0.83
ShhQ62226 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.23■□□□□ 0.83
ShhQ62226 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.23■□□□□ 0.83
ShhQ62226 Gm9959-201ENSMUST00000068277 390 ntBASIC20.23■□□□□ 0.83
ShhQ62226 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ShhQ62226 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
ShhQ62226 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
ShhQ62226 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.22■□□□□ 0.83
ShhQ62226 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.22■□□□□ 0.83
ShhQ62226 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
ShhQ62226 Gm45444-201ENSMUST00000211394 898 ntBASIC20.22■□□□□ 0.83
ShhQ62226 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.22■□□□□ 0.83
ShhQ62226 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.22■□□□□ 0.83
ShhQ62226 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ShhQ62226 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ShhQ62226 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ShhQ62226 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ShhQ62226 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ShhQ62226 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ShhQ62226 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.83
ShhQ62226 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
ShhQ62226 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ShhQ62226 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ShhQ62226 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.2■□□□□ 0.82
ShhQ62226 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
ShhQ62226 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
ShhQ62226 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ShhQ62226 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ShhQ62226 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ShhQ62226 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
ShhQ62226 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ShhQ62226 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ShhQ62226 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ShhQ62226 Gm44428-201ENSMUST00000204474 874 ntBASIC20.18■□□□□ 0.82
ShhQ62226 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
ShhQ62226 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms