Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav6d-4Q5R1I0 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC18.46■□□□□ 0.55
Trav6d-4Q5R1I0 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav6d-4Q5R1I0 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav6d-4Q5R1I0 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav6d-4Q5R1I0 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6d-4Q5R1I0 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6d-4Q5R1I0 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6d-4Q5R1I0 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC18.45■□□□□ 0.54
Trav6d-4Q5R1I0 Nsd1-203ENSMUST00000224156 1149 ntBASIC18.45■□□□□ 0.54
Trav6d-4Q5R1I0 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6d-4Q5R1I0 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6d-4Q5R1I0 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC18.44■□□□□ 0.54
Trav6d-4Q5R1I0 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
Trav6d-4Q5R1I0 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.44■□□□□ 0.54
Trav6d-4Q5R1I0 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6d-4Q5R1I0 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6d-4Q5R1I0 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6d-4Q5R1I0 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Trav6d-4Q5R1I0 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6d-4Q5R1I0 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6d-4Q5R1I0 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.41■□□□□ 0.54
Trav6d-4Q5R1I0 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Trav6d-4Q5R1I0 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Trav6d-4Q5R1I0 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6d-4Q5R1I0 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6d-4Q5R1I0 Gm6934-201ENSMUST00000194780 1905 ntBASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 Gm28731-201ENSMUST00000185564 1569 ntBASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav6d-4Q5R1I0 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Gm45444-201ENSMUST00000211394 898 ntBASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trav6d-4Q5R1I0 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6d-4Q5R1I0 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav6d-4Q5R1I0 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trav6d-4Q5R1I0 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC18.36■□□□□ 0.53
Trav6d-4Q5R1I0 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.36■□□□□ 0.53
Trav6d-4Q5R1I0 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
Trav6d-4Q5R1I0 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav6d-4Q5R1I0 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav6d-4Q5R1I0 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav6d-4Q5R1I0 Gm13238-201ENSMUST00000117655 780 ntBASIC18.35■□□□□ 0.53
Trav6d-4Q5R1I0 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trav6d-4Q5R1I0 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Trav6d-4Q5R1I0 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav6d-4Q5R1I0 AC117245.4-201ENSMUST00000217388 1646 ntBASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Gm43566-201ENSMUST00000196851 808 ntBASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trav6d-4Q5R1I0 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms