Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm7199-201ENSMUST00000118327 1485 ntBASIC25.77■■□□□ 1.72
Limch1Q3UH68 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
Limch1Q3UH68 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.72
Limch1Q3UH68 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Limch1Q3UH68 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Limch1Q3UH68 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC25.76■■□□□ 1.71
Limch1Q3UH68 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Limch1Q3UH68 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Limch1Q3UH68 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Limch1Q3UH68 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Limch1Q3UH68 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Limch1Q3UH68 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Limch1Q3UH68 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
Limch1Q3UH68 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Limch1Q3UH68 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Limch1Q3UH68 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Limch1Q3UH68 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Limch1Q3UH68 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Limch1Q3UH68 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Limch1Q3UH68 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC25.74■■□□□ 1.71
Limch1Q3UH68 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Limch1Q3UH68 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Limch1Q3UH68 Gm10420-201ENSMUST00000121713 882 ntBASIC25.73■■□□□ 1.71
Limch1Q3UH68 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Limch1Q3UH68 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Limch1Q3UH68 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Gm28731-201ENSMUST00000185564 1569 ntBASIC25.72■■□□□ 1.71
Limch1Q3UH68 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
Limch1Q3UH68 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Limch1Q3UH68 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
Limch1Q3UH68 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Limch1Q3UH68 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
Limch1Q3UH68 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Limch1Q3UH68 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
Limch1Q3UH68 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Limch1Q3UH68 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.71
Limch1Q3UH68 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Limch1Q3UH68 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Limch1Q3UH68 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC25.7■■□□□ 1.7
Limch1Q3UH68 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC25.7■■□□□ 1.7
Limch1Q3UH68 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Limch1Q3UH68 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
Limch1Q3UH68 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
Limch1Q3UH68 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Limch1Q3UH68 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Limch1Q3UH68 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
Limch1Q3UH68 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Limch1Q3UH68 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Limch1Q3UH68 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Limch1Q3UH68 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC25.68■■□□□ 1.7
Limch1Q3UH68 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC25.67■■□□□ 1.7
Limch1Q3UH68 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Limch1Q3UH68 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
Limch1Q3UH68 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
Limch1Q3UH68 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Limch1Q3UH68 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Limch1Q3UH68 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Limch1Q3UH68 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Limch1Q3UH68 Gm17641-201ENSMUST00000166328 2350 ntBASIC25.66■■□□□ 1.7
Limch1Q3UH68 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Limch1Q3UH68 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Limch1Q3UH68 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
Limch1Q3UH68 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Limch1Q3UH68 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Limch1Q3UH68 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
Limch1Q3UH68 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC25.64■■□□□ 1.7
Limch1Q3UH68 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC25.64■■□□□ 1.7
Limch1Q3UH68 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
Limch1Q3UH68 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Limch1Q3UH68 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Limch1Q3UH68 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Limch1Q3UH68 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Limch1Q3UH68 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
Limch1Q3UH68 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Limch1Q3UH68 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Limch1Q3UH68 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Limch1Q3UH68 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
Limch1Q3UH68 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC25.62■■□□□ 1.69
Limch1Q3UH68 Gm5921-201ENSMUST00000075898 882 ntBASIC25.62■■□□□ 1.69
Limch1Q3UH68 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC25.62■■□□□ 1.69
Limch1Q3UH68 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Limch1Q3UH68 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
Limch1Q3UH68 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Limch1Q3UH68 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Limch1Q3UH68 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Limch1Q3UH68 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
Limch1Q3UH68 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC25.61■■□□□ 1.69
Limch1Q3UH68 Gm5812-201ENSMUST00000061073 957 ntBASIC25.61■■□□□ 1.69
Limch1Q3UH68 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC25.61■■□□□ 1.69
Limch1Q3UH68 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
Limch1Q3UH68 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Limch1Q3UH68 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Limch1Q3UH68 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Limch1Q3UH68 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms