Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Shmt1P50431 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Shmt1P50431 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Shmt1P50431 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC23.33■■□□□ 1.33
Shmt1P50431 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Shmt1P50431 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Shmt1P50431 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Shmt1P50431 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Shmt1P50431 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Shmt1P50431 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC23.32■■□□□ 1.32
Shmt1P50431 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Shmt1P50431 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC23.31■■□□□ 1.32
Shmt1P50431 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
Shmt1P50431 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Shmt1P50431 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Shmt1P50431 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Shmt1P50431 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Shmt1P50431 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Shmt1P50431 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Shmt1P50431 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Shmt1P50431 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Shmt1P50431 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Shmt1P50431 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Shmt1P50431 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Shmt1P50431 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Shmt1P50431 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Shmt1P50431 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Shmt1P50431 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC23.28■■□□□ 1.32
Shmt1P50431 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Shmt1P50431 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Shmt1P50431 AC117245.4-201ENSMUST00000217388 1646 ntBASIC23.28■■□□□ 1.32
Shmt1P50431 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Shmt1P50431 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Shmt1P50431 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Shmt1P50431 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Shmt1P50431 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Shmt1P50431 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Shmt1P50431 Gm28731-201ENSMUST00000185564 1569 ntBASIC23.27■■□□□ 1.32
Shmt1P50431 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Shmt1P50431 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Shmt1P50431 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Shmt1P50431 Gm5921-201ENSMUST00000075898 882 ntBASIC23.26■■□□□ 1.31
Shmt1P50431 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.25■■□□□ 1.31
Shmt1P50431 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Shmt1P50431 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Shmt1P50431 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Shmt1P50431 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Shmt1P50431 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
Shmt1P50431 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.24■■□□□ 1.31
Shmt1P50431 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC23.23■■□□□ 1.31
Shmt1P50431 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Shmt1P50431 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
Shmt1P50431 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Shmt1P50431 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Shmt1P50431 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Shmt1P50431 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Shmt1P50431 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Shmt1P50431 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Shmt1P50431 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Shmt1P50431 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Shmt1P50431 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Shmt1P50431 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
Shmt1P50431 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC23.21■■□□□ 1.31
Shmt1P50431 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC23.21■■□□□ 1.31
Shmt1P50431 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Shmt1P50431 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Shmt1P50431 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC23.2■■□□□ 1.3
Shmt1P50431 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Shmt1P50431 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Shmt1P50431 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Shmt1P50431 Gm13238-201ENSMUST00000117655 780 ntBASIC23.19■■□□□ 1.3
Shmt1P50431 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Shmt1P50431 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Shmt1P50431 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Shmt1P50431 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Shmt1P50431 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC23.18■■□□□ 1.3
Shmt1P50431 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Shmt1P50431 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Shmt1P50431 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Shmt1P50431 Nsd1-203ENSMUST00000224156 1149 ntBASIC23.17■■□□□ 1.3
Shmt1P50431 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Shmt1P50431 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Shmt1P50431 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Shmt1P50431 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Shmt1P50431 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Shmt1P50431 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Shmt1P50431 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Shmt1P50431 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Shmt1P50431 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Shmt1P50431 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Shmt1P50431 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Shmt1P50431 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Shmt1P50431 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC23.15■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms