Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Gm38230-201ENSMUST00000193572 1159 ntBASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 AC126253.1-201ENSMUST00000227974 824 ntBASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Ankra2-208ENSMUST00000226100 1476 ntBASIC18.32■□□□□ 0.52
Chd4Q6PDQ2 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Gm5069-202ENSMUST00000192714 1011 ntBASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Gm42929-201ENSMUST00000198374 1286 ntBASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Gm42853-201ENSMUST00000201273 1387 ntBASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Mir1247-201ENSMUST00000116706 82 ntBASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Gm42693-201ENSMUST00000196779 631 ntBASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Gm18934-201ENSMUST00000216671 1044 ntBASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chd4Q6PDQ2 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Gm27331-201ENSMUST00000183705 60 ntBASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Chd4Q6PDQ2 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Gm29127-201ENSMUST00000188304 517 ntBASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 AC131997.1-201ENSMUST00000228611 1229 ntBASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Gm20632-201ENSMUST00000176760 2427 ntBASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd4Q6PDQ2 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Chd4Q6PDQ2 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd4Q6PDQ2 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd4Q6PDQ2 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chd4Q6PDQ2 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC18.28■□□□□ 0.52
Chd4Q6PDQ2 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd4Q6PDQ2 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd4Q6PDQ2 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms