Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col11a1Q61245 Gm10268-201ENSMUST00000085340 555 ntBASIC15.68■□□□□ 0.1
Col11a1Q61245 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC15.67■□□□□ 0.1
Col11a1Q61245 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Gm6082-201ENSMUST00000215204 454 ntBASIC15.67■□□□□ 0.1
Col11a1Q61245 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col11a1Q61245 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col11a1Q61245 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm6222-202ENSMUST00000182143 629 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm27320-201ENSMUST00000184892 109 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Mir433-201ENSMUST00000093564 124 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC15.66■□□□□ 0.1
Col11a1Q61245 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 AC153366.2-201ENSMUST00000219461 1984 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.66■□□□□ 0.1
Col11a1Q61245 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC15.66■□□□□ 0.1
Col11a1Q61245 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm12997-201ENSMUST00000120207 640 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC15.66■□□□□ 0.1
Col11a1Q61245 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC15.66■□□□□ 0.1
Col11a1Q61245 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm25261-201ENSMUST00000157416 134 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm5363-201ENSMUST00000211927 938 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm7046-201ENSMUST00000221351 977 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Gm2824-203ENSMUST00000226189 1228 ntBASIC15.66■□□□□ 0.1
Col11a1Q61245 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col11a1Q61245 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col11a1Q61245 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col11a1Q61245 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Gm15370-201ENSMUST00000117158 253 ntBASIC15.65■□□□□ 0.1
Col11a1Q61245 Gm9431-201ENSMUST00000119765 1051 ntBASIC15.65■□□□□ 0.1
Col11a1Q61245 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC15.65■□□□□ 0.1
Col11a1Q61245 Gm24447-201ENSMUST00000083977 338 ntBASIC15.65■□□□□ 0.1
Col11a1Q61245 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col11a1Q61245 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 AC113441.2-201ENSMUST00000221538 1468 ntBASIC15.65■□□□□ 0.1
Col11a1Q61245 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC15.65■□□□□ 0.1
Col11a1Q61245 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col11a1Q61245 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Col11a1Q61245 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC15.64■□□□□ 0.1
Col11a1Q61245 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Col11a1Q61245 Gm9347-201ENSMUST00000211473 1607 ntBASIC15.64■□□□□ 0.09
Col11a1Q61245 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col11a1Q61245 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Gm9445-201ENSMUST00000207454 1285 ntBASIC15.64■□□□□ 0.09
Col11a1Q61245 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
Col11a1Q61245 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col11a1Q61245 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
Col11a1Q61245 Gm9755-201ENSMUST00000032981 1356 ntBASIC15.64■□□□□ 0.09
Col11a1Q61245 Gm45684-201ENSMUST00000210244 1571 ntBASIC15.64■□□□□ 0.09
Col11a1Q61245 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.64■□□□□ 0.09
Col11a1Q61245 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col11a1Q61245 Gm14381-201ENSMUST00000122105 414 ntBASIC15.64■□□□□ 0.09
Col11a1Q61245 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms