Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Gm37714-201ENSMUST00000194742 342 ntBASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 AC102291.3-201ENSMUST00000226566 405 ntBASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Gm5356-201ENSMUST00000093326 615 ntBASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3aQ3ULJ3 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Gm9899-201ENSMUST00000065519 555 ntBASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Upf3aQ3ULJ3 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.96□□□□□ -0.02
Upf3aQ3ULJ3 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Upf3aQ3ULJ3 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Mir692-1-201ENSMUST00000102263 109 ntBASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Gm4984-201ENSMUST00000115987 360 ntBASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 AY702102-202ENSMUST00000194651 1173 ntBASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Gm18905-201ENSMUST00000205454 928 ntBASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 AC139350.3-201ENSMUST00000226151 420 ntBASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Upf3aQ3ULJ3 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 AC114008.2-201ENSMUST00000227699 1347 ntBASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms