Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Cdx1P18111 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Cdx1P18111 Gm5837-201ENSMUST00000191844 1369 ntBASIC11.56□□□□□ -0.56
Cdx1P18111 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Gm15467-201ENSMUST00000120582 445 ntBASIC11.56□□□□□ -0.56
Cdx1P18111 Gm15173-201ENSMUST00000122049 433 ntBASIC11.56□□□□□ -0.56
Cdx1P18111 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC11.56□□□□□ -0.56
Cdx1P18111 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC11.56□□□□□ -0.56
Cdx1P18111 Gm5264-201ENSMUST00000190584 848 ntBASIC11.56□□□□□ -0.56
Cdx1P18111 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Gm43332-201ENSMUST00000202511 1044 ntBASIC11.56□□□□□ -0.56
Cdx1P18111 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Gm43868-201ENSMUST00000205187 2114 ntBASIC11.56□□□□□ -0.56
Cdx1P18111 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Cdx1P18111 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Cdx1P18111 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
Cdx1P18111 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cdx1P18111 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Gm4459-201ENSMUST00000118750 468 ntBASIC11.55□□□□□ -0.56
Cdx1P18111 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC11.55□□□□□ -0.56
Cdx1P18111 Gm6089-201ENSMUST00000197666 938 ntBASIC11.55□□□□□ -0.56
Cdx1P18111 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC11.55□□□□□ -0.56
Cdx1P18111 AC159093.1-201ENSMUST00000227779 380 ntBASIC11.55□□□□□ -0.56
Cdx1P18111 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cdx1P18111 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cdx1P18111 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 AC164702.1-201ENSMUST00000220135 2212 ntBASIC11.55□□□□□ -0.56
Cdx1P18111 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx1P18111 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Cdx1P18111 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
Cdx1P18111 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx1P18111 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Cdx1P18111 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx1P18111 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Cdx1P18111 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx1P18111 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Cdx1P18111 Gm8097-201ENSMUST00000117903 829 ntBASIC11.54□□□□□ -0.56
Cdx1P18111 Gm11779-201ENSMUST00000118541 368 ntBASIC11.54□□□□□ -0.56
Cdx1P18111 Gm11594-201ENSMUST00000122313 162 ntBASIC11.54□□□□□ -0.56
Cdx1P18111 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC11.54□□□□□ -0.56
Cdx1P18111 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC11.54□□□□□ -0.56
Cdx1P18111 Gm6550-201ENSMUST00000187574 993 ntBASIC11.54□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms