Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm15358-201ENSMUST00000119249 520 ntBASIC11.83□□□□□ -0.52
Hmgb3O54879 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC11.83□□□□□ -0.52
Hmgb3O54879 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gm4081-201ENSMUST00000195287 1838 ntBASIC11.83□□□□□ -0.52
Hmgb3O54879 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Hmgb3O54879 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Gm11453-201ENSMUST00000117318 1007 ntBASIC11.82□□□□□ -0.52
Hmgb3O54879 Olfr129-201ENSMUST00000122318 993 ntBASIC11.82□□□□□ -0.52
Hmgb3O54879 Gm12497-201ENSMUST00000138778 237 ntBASIC11.82□□□□□ -0.52
Hmgb3O54879 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC11.82□□□□□ -0.52
Hmgb3O54879 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Hmgb3O54879 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Hmgb3O54879 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC11.81□□□□□ -0.52
Hmgb3O54879 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC11.81□□□□□ -0.52
Hmgb3O54879 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Hmgb3O54879 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 101.1 ms