Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Trim56Q80VI1 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 AC121801.1-201ENSMUST00000225363 1899 ntBASIC16.86■□□□□ 0.29
Trim56Q80VI1 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gm4875-201ENSMUST00000118257 786 ntBASIC16.86■□□□□ 0.29
Trim56Q80VI1 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gm9229-201ENSMUST00000222777 126 ntBASIC16.86■□□□□ 0.29
Trim56Q80VI1 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gm9109-201ENSMUST00000120254 1405 ntBASIC16.86■□□□□ 0.29
Trim56Q80VI1 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trim56Q80VI1 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Gm43205-201ENSMUST00000198622 1968 ntBASIC16.85■□□□□ 0.29
Trim56Q80VI1 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim56Q80VI1 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim56Q80VI1 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Gm4204-201ENSMUST00000110798 1231 ntBASIC16.84■□□□□ 0.29
Trim56Q80VI1 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 AC124751.1-201ENSMUST00000222716 1408 ntBASIC16.84■□□□□ 0.29
Trim56Q80VI1 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim56Q80VI1 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms