Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Fgf17-202ENSMUST00000227123 1336 ntBASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Upf3bQ3ULL6 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Gm37171-201ENSMUST00000192636 1185 ntBASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Gm13517-201ENSMUST00000120782 1495 ntBASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Upf3bQ3ULL6 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Gm6415-201ENSMUST00000118488 348 ntBASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Gm15693-201ENSMUST00000120470 637 ntBASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Gm6222-201ENSMUST00000120787 396 ntBASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3bQ3ULL6 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Gm7336-201ENSMUST00000107041 1232 ntBASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Gm5566-201ENSMUST00000116118 459 ntBASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3bQ3ULL6 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms