Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm27844-201ENSMUST00000183613 62 ntBASIC21.52■■□□□ 1.04
Col17a1Q07563 Gm37905-201ENSMUST00000195310 341 ntBASIC21.52■■□□□ 1.04
Col17a1Q07563 Gm17889-201ENSMUST00000198410 598 ntBASIC21.52■■□□□ 1.04
Col17a1Q07563 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC21.52■■□□□ 1.04
Col17a1Q07563 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col17a1Q07563 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Col17a1Q07563 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col17a1Q07563 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC21.52■■□□□ 1.04
Col17a1Q07563 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Col17a1Q07563 AC114543.1-201ENSMUST00000226451 1558 ntBASIC21.52■■□□□ 1.04
Col17a1Q07563 Gm37166-201ENSMUST00000195473 2474 ntBASIC21.52■■□□□ 1.04
Col17a1Q07563 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Col17a1Q07563 Gm25880-201ENSMUST00000104331 132 ntBASIC21.52■■□□□ 1.03
Col17a1Q07563 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Col17a1Q07563 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Col17a1Q07563 Gm20392-201ENSMUST00000173047 701 ntBASIC21.52■■□□□ 1.03
Col17a1Q07563 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC21.52■■□□□ 1.03
Col17a1Q07563 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC21.52■■□□□ 1.03
Col17a1Q07563 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Col17a1Q07563 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
Col17a1Q07563 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Col17a1Q07563 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC21.51■■□□□ 1.03
Col17a1Q07563 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC21.51■■□□□ 1.03
Col17a1Q07563 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Gm10434-201ENSMUST00000101158 471 ntBASIC21.51■■□□□ 1.03
Col17a1Q07563 Gm25214-201ENSMUST00000104573 129 ntBASIC21.51■■□□□ 1.03
Col17a1Q07563 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC21.51■■□□□ 1.03
Col17a1Q07563 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Mir497b-201ENSMUST00000093601 125 ntBASIC21.51■■□□□ 1.03
Col17a1Q07563 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col17a1Q07563 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Col17a1Q07563 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Col17a1Q07563 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC21.5■■□□□ 1.03
Col17a1Q07563 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Gm26956-201ENSMUST00000182176 986 ntBASIC21.5■■□□□ 1.03
Col17a1Q07563 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Gm6458-201ENSMUST00000211573 635 ntBASIC21.5■■□□□ 1.03
Col17a1Q07563 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC21.5■■□□□ 1.03
Col17a1Q07563 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Col17a1Q07563 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col17a1Q07563 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
Col17a1Q07563 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
Col17a1Q07563 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC21.49■■□□□ 1.03
Col17a1Q07563 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC21.49■■□□□ 1.03
Col17a1Q07563 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC21.49■■□□□ 1.03
Col17a1Q07563 Gm26361-201ENSMUST00000158868 186 ntBASIC21.49■■□□□ 1.03
Col17a1Q07563 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
Col17a1Q07563 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC21.49■■□□□ 1.03
Col17a1Q07563 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC21.49■■□□□ 1.03
Col17a1Q07563 AC154849.4-201ENSMUST00000224868 365 ntBASIC21.49■■□□□ 1.03
Col17a1Q07563 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Col17a1Q07563 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col17a1Q07563 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Col17a1Q07563 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Col17a1Q07563 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Col17a1Q07563 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC21.48■■□□□ 1.03
Col17a1Q07563 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC21.48■■□□□ 1.03
Col17a1Q07563 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col17a1Q07563 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC21.47■■□□□ 1.03
Col17a1Q07563 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms