Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Shox2P70390 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Shox2P70390 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Shox2P70390 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Shox2P70390 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Shox2P70390 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Shox2P70390 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Shox2P70390 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 AC126549.2-201ENSMUST00000223997 1976 ntBASIC14.14□□□□□ -0.15
Shox2P70390 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Shox2P70390 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Shox2P70390 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Gm2308-201ENSMUST00000166539 1004 ntBASIC14.14□□□□□ -0.15
Shox2P70390 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC14.14□□□□□ -0.15
Shox2P70390 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Shox2P70390 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.14□□□□□ -0.15
Shox2P70390 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC14.14□□□□□ -0.15
Shox2P70390 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Shox2P70390 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Shox2P70390 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Shox2P70390 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
Shox2P70390 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.13□□□□□ -0.15
Shox2P70390 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.13□□□□□ -0.15
Shox2P70390 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Shox2P70390 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC14.13□□□□□ -0.15
Shox2P70390 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Shox2P70390 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Shox2P70390 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.13□□□□□ -0.15
Shox2P70390 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Shox2P70390 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Shox2P70390 Gm5763-201ENSMUST00000155951 1530 ntBASIC14.12□□□□□ -0.15
Shox2P70390 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Shox2P70390 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.12□□□□□ -0.15
Shox2P70390 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Gm11185-201ENSMUST00000117732 1007 ntBASIC14.12□□□□□ -0.15
Shox2P70390 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.12□□□□□ -0.15
Shox2P70390 AC130671.1-201ENSMUST00000227384 1237 ntBASIC14.12□□□□□ -0.15
Shox2P70390 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.12□□□□□ -0.15
Shox2P70390 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Shox2P70390 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms