Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Shmt1P50431 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Shmt1P50431 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Gm15487-201ENSMUST00000122373 465 ntBASIC15.12■□□□□ 0.01
Shmt1P50431 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Gm6916-202ENSMUST00000205523 195 ntBASIC15.12■□□□□ 0.01
Shmt1P50431 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Shmt1P50431 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Shmt1P50431 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Shmt1P50431 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Shmt1P50431 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Shmt1P50431 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.11■□□□□ 0.01
Shmt1P50431 Gm15653-201ENSMUST00000119247 907 ntBASIC15.11■□□□□ 0.01
Shmt1P50431 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.11■□□□□ 0.01
Shmt1P50431 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Shmt1P50431 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC15.11■□□□□ 0.01
Shmt1P50431 Gm27437-201ENSMUST00000183429 107 ntBASIC15.11■□□□□ 0.01
Shmt1P50431 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.11■□□□□ 0.01
Shmt1P50431 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Shmt1P50431 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Shmt1P50431 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Shmt1P50431 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Gm12620-201ENSMUST00000119791 1986 ntBASIC15.11■□□□□ 0.01
Shmt1P50431 Gm12612-201ENSMUST00000140182 1986 ntBASIC15.11■□□□□ 0.01
Shmt1P50431 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Shmt1P50431 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.11■□□□□ 0.01
Shmt1P50431 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC15.11■□□□□ 0.01
Shmt1P50431 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Shmt1P50431 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.1■□□□□ 0.01
Shmt1P50431 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.1■□□□□ 0.01
Shmt1P50431 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC15.1■□□□□ 0.01
Shmt1P50431 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.1■□□□□ 0.01
Shmt1P50431 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.1■□□□□ 0.01
Shmt1P50431 Mir8102-201ENSMUST00000184148 139 ntBASIC15.1■□□□□ 0.01
Shmt1P50431 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.1■□□□□ 0.01
Shmt1P50431 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Shmt1P50431 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC15.1■□□□□ 0.01
Shmt1P50431 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Shmt1P50431 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shmt1P50431 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms