Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 Gm6018-201ENSMUST00000216090 1306 ntBASIC14.02□□□□□ -0.17
Cbx4O55187 Gm13365-201ENSMUST00000121188 973 ntBASIC14.02□□□□□ -0.17
Cbx4O55187 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14.02□□□□□ -0.17
Cbx4O55187 Gm18889-201ENSMUST00000174284 929 ntBASIC14.02□□□□□ -0.17
Cbx4O55187 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cbx4O55187 AC151286.1-201ENSMUST00000198489 145 ntBASIC14.02□□□□□ -0.17
Cbx4O55187 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC14.02□□□□□ -0.17
Cbx4O55187 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cbx4O55187 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Cbx4O55187 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cbx4O55187 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.02□□□□□ -0.17
Cbx4O55187 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Cbx4O55187 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Cbx4O55187 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC14.01□□□□□ -0.17
Cbx4O55187 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Cbx4O55187 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC14.01□□□□□ -0.17
Cbx4O55187 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 AC102291.3-201ENSMUST00000226566 405 ntBASIC14.01□□□□□ -0.17
Cbx4O55187 AC123645.1-201ENSMUST00000228469 605 ntBASIC14.01□□□□□ -0.17
Cbx4O55187 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Cbx4O55187 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cbx4O55187 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Gm42466-201ENSMUST00000202099 1301 ntBASIC14□□□□□ -0.17
Cbx4O55187 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC14□□□□□ -0.17
Cbx4O55187 AC158529.1-201ENSMUST00000223618 239 ntBASIC14□□□□□ -0.17
Cbx4O55187 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Cbx4O55187 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC14□□□□□ -0.17
Cbx4O55187 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14□□□□□ -0.17
Cbx4O55187 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14□□□□□ -0.17
Cbx4O55187 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Cbx4O55187 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Cbx4O55187 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.99□□□□□ -0.17
Cbx4O55187 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC13.99□□□□□ -0.17
Cbx4O55187 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC13.99□□□□□ -0.17
Cbx4O55187 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Cbx4O55187 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC13.99□□□□□ -0.17
Cbx4O55187 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.99□□□□□ -0.17
Cbx4O55187 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.99□□□□□ -0.17
Cbx4O55187 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cbx4O55187 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 121.4 ms