Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx54Q8K4L0 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx54Q8K4L0 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Ddx54Q8K4L0 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
Ddx54Q8K4L0 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Gm27331-201ENSMUST00000183705 60 ntBASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Gm44397-201ENSMUST00000195950 113 ntBASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 CT573034.1-201ENSMUST00000222983 313 ntBASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx54Q8K4L0 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Gm38341-201ENSMUST00000195357 515 ntBASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 AC133598.1-201ENSMUST00000224327 660 ntBASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 AC166997.1-201ENSMUST00000225122 572 ntBASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 AC155237.1-201ENSMUST00000226196 1279 ntBASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Ddx54Q8K4L0 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm12485-201ENSMUST00000119641 291 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm12176-201ENSMUST00000121420 875 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm1335-201ENSMUST00000121653 386 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Ighv8-14-201ENSMUST00000196781 358 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Gm29705-201ENSMUST00000212598 474 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Prob1-201ENSMUST00000097619 3021 ntBASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx54Q8K4L0 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx54Q8K4L0 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms