Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Mir449b-201ENSMUST00000104833 80 ntBASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Brf1Q8CFK2 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 AC102291.3-201ENSMUST00000226566 405 ntBASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Brf1Q8CFK2 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Brf1Q8CFK2 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Brf1Q8CFK2 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC17.33■□□□□ 0.37
Brf1Q8CFK2 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Brf1Q8CFK2 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC17.33■□□□□ 0.37
Brf1Q8CFK2 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Brf1Q8CFK2 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Brf1Q8CFK2 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Brf1Q8CFK2 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Brf1Q8CFK2 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Gm6222-201ENSMUST00000120787 396 ntBASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Brf1Q8CFK2 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Gm25948-201ENSMUST00000175334 112 ntBASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Brf1Q8CFK2 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms