Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim56Q80VI1 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Gm6159-201ENSMUST00000191249 1724 ntBASIC16.93■□□□□ 0.3
Trim56Q80VI1 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Gm5320-201ENSMUST00000207163 1519 ntBASIC16.93■□□□□ 0.3
Trim56Q80VI1 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.93■□□□□ 0.3
Trim56Q80VI1 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim56Q80VI1 Mmp14-206ENSMUST00000225641 3238 ntBASIC16.92■□□□□ 0.3
Trim56Q80VI1 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
Trim56Q80VI1 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Gm6916-202ENSMUST00000205523 195 ntBASIC16.92■□□□□ 0.3
Trim56Q80VI1 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim56Q80VI1 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Gm15957-201ENSMUST00000118893 974 ntBASIC16.91■□□□□ 0.3
Trim56Q80VI1 Gm15653-201ENSMUST00000119247 907 ntBASIC16.91■□□□□ 0.3
Trim56Q80VI1 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim56Q80VI1 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Gm15487-201ENSMUST00000122373 465 ntBASIC16.9■□□□□ 0.3
Trim56Q80VI1 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trim56Q80VI1 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms