Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
Col8a1Q00780 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col8a1Q00780 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col8a1Q00780 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC12.24□□□□□ -0.45
Col8a1Q00780 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.24□□□□□ -0.45
Col8a1Q00780 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.24□□□□□ -0.45
Col8a1Q00780 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Col8a1Q00780 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Gm7556-201ENSMUST00000201178 1084 ntBASIC12.24□□□□□ -0.45
Col8a1Q00780 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC12.24□□□□□ -0.45
Col8a1Q00780 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.24□□□□□ -0.45
Col8a1Q00780 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col8a1Q00780 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Col8a1Q00780 Gm5356-201ENSMUST00000093326 615 ntBASIC12.24□□□□□ -0.45
Col8a1Q00780 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC12.24□□□□□ -0.45
Col8a1Q00780 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col8a1Q00780 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.23□□□□□ -0.45
Col8a1Q00780 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.23□□□□□ -0.45
Col8a1Q00780 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.23□□□□□ -0.45
Col8a1Q00780 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Gm12341-201ENSMUST00000119724 503 ntBASIC12.23□□□□□ -0.45
Col8a1Q00780 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC12.23□□□□□ -0.45
Col8a1Q00780 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Gm17420-201ENSMUST00000164753 153 ntBASIC12.23□□□□□ -0.45
Col8a1Q00780 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Gm45453-201ENSMUST00000211758 853 ntBASIC12.23□□□□□ -0.45
Col8a1Q00780 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC12.23□□□□□ -0.45
Col8a1Q00780 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col8a1Q00780 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Gm42473-201ENSMUST00000201056 2291 ntBASIC12.22□□□□□ -0.45
Col8a1Q00780 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col8a1Q00780 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col8a1Q00780 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms