Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim54Q9ERP3 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim54Q9ERP3 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Gm42612-201ENSMUST00000197986 623 ntBASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Gm43170-201ENSMUST00000199827 612 ntBASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Gm9794-201ENSMUST00000202370 423 ntBASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim54Q9ERP3 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Trim54Q9ERP3 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Trim54Q9ERP3 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms