Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Trim40Q3UWA4 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Rbfox2-207ENSMUST00000227533 1041 ntBASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Gm12626-201ENSMUST00000117339 1983 ntBASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Gm12623-201ENSMUST00000119849 1983 ntBASIC13.51□□□□□ -0.25
Trim40Q3UWA4 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Trim40Q3UWA4 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Trim40Q3UWA4 Gm17807-201ENSMUST00000186869 298 ntBASIC13.49□□□□□ -0.25
Trim40Q3UWA4 AC158538.1-201ENSMUST00000225870 294 ntBASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms