Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.46■□□□□ 0.07
Nr1i3O35627 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Nr1i3O35627 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Nr1i3O35627 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC15.46■□□□□ 0.07
Nr1i3O35627 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Nr1i3O35627 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Nr1i3O35627 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Nr1i3O35627 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Nr1i3O35627 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.46■□□□□ 0.06
Nr1i3O35627 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Nr1i3O35627 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
Nr1i3O35627 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.45■□□□□ 0.06
Nr1i3O35627 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.45■□□□□ 0.06
Nr1i3O35627 Gm12882-201ENSMUST00000121696 517 ntBASIC15.45■□□□□ 0.06
Nr1i3O35627 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.45■□□□□ 0.06
Nr1i3O35627 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.45■□□□□ 0.06
Nr1i3O35627 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.45■□□□□ 0.06
Nr1i3O35627 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
Nr1i3O35627 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Nr1i3O35627 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Nr1i3O35627 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
Nr1i3O35627 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
Nr1i3O35627 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Nr1i3O35627 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC15.44■□□□□ 0.06
Nr1i3O35627 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.44■□□□□ 0.06
Nr1i3O35627 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Gm6226-201ENSMUST00000117765 1146 ntBASIC15.44■□□□□ 0.06
Nr1i3O35627 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Gm18737-201ENSMUST00000173594 937 ntBASIC15.44■□□□□ 0.06
Nr1i3O35627 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC15.44■□□□□ 0.06
Nr1i3O35627 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Nr1i3O35627 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Gm9109-201ENSMUST00000120254 1405 ntBASIC15.43■□□□□ 0.06
Nr1i3O35627 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.43■□□□□ 0.06
Nr1i3O35627 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Gm20553-201ENSMUST00000204205 844 ntBASIC15.43■□□□□ 0.06
Nr1i3O35627 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms