Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 Gm14042-201ENSMUST00000120139 833 ntBASIC16.64■□□□□ 0.25
Prpf40bQ80W14 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 AC158529.1-201ENSMUST00000223618 239 ntBASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Prpf40bQ80W14 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40bQ80W14 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm5320-201ENSMUST00000207163 1519 ntBASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm24543-201ENSMUST00000103867 82 ntBASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm45195-201ENSMUST00000205597 1008 ntBASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Shd-206ENSMUST00000225145 998 ntBASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40bQ80W14 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Klk2-ps-201ENSMUST00000205342 571 ntBASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm42466-201ENSMUST00000202099 1301 ntBASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40bQ80W14 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms