Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Gm12151-201ENSMUST00000121374 290 ntBASIC17■□□□□ 0.31
Trim56Q80VI1 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trim56Q80VI1 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Gm27680-201ENSMUST00000184192 160 ntBASIC17■□□□□ 0.31
Trim56Q80VI1 Gm10576-201ENSMUST00000191927 825 ntBASIC17■□□□□ 0.31
Trim56Q80VI1 Gm9063-201ENSMUST00000223299 582 ntBASIC17■□□□□ 0.31
Trim56Q80VI1 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trim56Q80VI1 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
Trim56Q80VI1 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trim56Q80VI1 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trim56Q80VI1 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Gm44981-201ENSMUST00000205549 1943 ntBASIC17■□□□□ 0.31
Trim56Q80VI1 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim56Q80VI1 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Gm12882-201ENSMUST00000121696 517 ntBASIC16.99■□□□□ 0.31
Trim56Q80VI1 Gm12134-201ENSMUST00000122109 520 ntBASIC16.99■□□□□ 0.31
Trim56Q80VI1 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Gm44344-201ENSMUST00000200287 129 ntBASIC16.99■□□□□ 0.31
Trim56Q80VI1 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Trim56Q80VI1 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Gm7775-201ENSMUST00000218871 853 ntBASIC16.98■□□□□ 0.31
Trim56Q80VI1 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 AC154231.1-201ENSMUST00000220564 2175 ntBASIC16.98■□□□□ 0.31
Trim56Q80VI1 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.98■□□□□ 0.31
Trim56Q80VI1 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim56Q80VI1 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms